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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagataaaacctctaatcttgtttagttttatctttaaatggacatgaataagctttctaatgattacaaaatggattaaatttgtagATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGACACGTGTCACATATCGGTTGGGATAGTTCATCAAGTAGTGCACCTAGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G61795.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116388559|gb|EG431151.1|EG431151
EST:     TGTTTCTCCGACATTTTTG                         ATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTC
genomic: TGTTTCTCCGACATTTTTGgtaaatagat ... aaatttgtagATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTC
EST: gi|116407035|gb|EG449627.1|EG449627
EST:     ATTCAAGGGGCTTTATAACAAGAGCTTCAAATGTTTCTCCGACATTTTTG                         ATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGAC
genomic: ATTCAAGGGGCTTTATAACAAGAGCTTCAAATGTTTCTCCGACATTTTTGgtaaatagat ... aaatttgtagATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaatggacatgaataagctttctaatgattacaaaatggattaaatttgtagATGTGGAGGAGGAGGAGGAGATGGAAATTGGTTATCCGACCGATGTTCGACACGTGTCACATATCGGTTGGGATAGTTCATCAAGTAGTGCACCTAGTTG
                      ttctaat  putative branch site (score: 2)
                              attacaaaatggatta  TA-rich tract