1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttttgttcttgcttggttttgtcattggatttgttagatgttatctgctgtgtttataagtttttatcttattttctagtatttgtttctggttgaaagAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCCAAGGAAAAGAGCTAGCCGACACCGTGGGAAAG
species | Arabidopsis thaliana |
transcript | AT1G61580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAACATTAATATCTCTACTCATATCGCCGACTTAAAG AATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTEST: gi|124971494|gb|EL045256.1|EL045256
genomic: AAACATTAATATCTCTACTCATATCGCCGACTTAAAGgtacataaag ... tggttgaaagAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCT
EST: AAACATTAATATCTCTACTCATATCGCCGACTTAAAG AATGTCTCACAGAAAGTTTGAGCATCCAAGA
genomic: AAACATTAATATCTCTACTCATATCGCCGACTTAAAGgtacataaag ... tggttgaaagAATGTCTCACAGAAAGTTTGAGCATCCAAGA
ctgctgtgtttataagtttttatcttattttctagtatttgtttctggttgaaagAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCCAAGGAAAAGAGCTAGCCGACACCGTGGGAAAG
tttgtttct CT-rich tract
tttataagtttttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgttcttgcttggttttgtcattggatttgttagatgttatctgctgtgtttataagtttttatcttattttctagtatttgtttctggttgaaagAATGTCTCACAGAAAGTTTGAGCATCCAAGACATGGTTCTTTGGGTTTCCTTCCAAGGAAAAGAGCTAGCCGACACCGTGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - -ggttttg
- - - - - - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - - - - - -ctgctgt