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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatctactatttgtcatgaatcttgaagacgtttctcactgaattttgttttttcttaaatgatttgtaatggttgtgaatctattttacatgatgtagAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTTTGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTG

Basic information

species Arabidopsis thaliana
transcript AT1G61250.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164225311|gb|ES081556.1|ES081556
EST:     ATCCTTTCGCTGAGGAAGAAGAAGTCAATCCTTTCGCT
genomic: ATCCTTTCGCTGAGGAAGAAGAAGTCAATCCTTTCGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttttttcttaaatgatttgtaatggttgtgaatctattttacatgatgtagAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTTTGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTG
     tttttcttaaatgatt  TA-rich tract