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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttatatttcctaatttatgctttaatgatatgattaaaatgtacgatttaattttactatgaccactgtaatctagccactatttaaatttggtatatatagtaactatcttgtggataataatattttgaatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTA

Basic information

species Arabidopsis thaliana
transcript AT1G61110.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86046307|gb|DR342062.1|DR342062
EST:     ATCATCGCAGAGATTTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: ATCATCGCAGAGATT-GATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046299|gb|DR342054.1|DR342054
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046300|gb|DR342055.1|DR342055
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCTAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046304|gb|DR342059.1|DR342059
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046315|gb|DR342070.1|DR342070
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046318|gb|DR342073.1|DR342073
EST:     AATCATCGSAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046319|gb|DR342074.1|DR342074
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046302|gb|DR342057.1|DR342057
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046309|gb|DR342064.1|DR342064
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046320|gb|DR342075.1|DR342075
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046308|gb|DR342063.1|DR342063
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046316|gb|DR342071.1|DR342071
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046301|gb|DR342056.1|DR342056
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGYGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046306|gb|DR342061.1|DR342061
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046312|gb|DR342067.1|DR342067
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046311|gb|DR342066.1|DR342066
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046313|gb|DR342068.1|DR342068
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046321|gb|DR342076.1|DR342076
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046297|gb|DR342052.1|DR342052
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046303|gb|DR342058.1|DR342058
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046317|gb|DR342072.1|DR342072
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
EST: gi|86046310|gb|DR342065.1|DR342065
EST:     AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAA                         GCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC
genomic: AATCATCGCAGAGATTGATCTTTACAAGTTTGATCCTTGGGAGCTTCCAAgtatttatat ... aatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttggtatatatagtaactatcttgtggataataatattttgaatggtttagGCAAGGCGAGTTTTGGAGAGCACGAGTGGTACTTCTTTAGTCCTCGGGATCGGAAGTATCCAAATGGGGTTAGGCCAAACCGGGCAGCAACTTCCGGTTA
              tagtaac  putative branch site (score: 1)
                               ataataatattttgaa  TA-rich tract