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...agaatcctcttagcatttttgatgaagcttcgattctttataaattgagagtatgtaaatgtaaatgaattcatcattttaatgacaatttgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAAT
species | Arabidopsis thaliana |
transcript | AT1G60070.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCEST: gi|86064708|gb|DR360465.1|DR360465
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCEST: gi|19875009|gb|AU235840.1|AU235840
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCEST: gi|86064710|gb|DR360467.1|DR360467
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: CTTCGTACCGCTCCGGTCATGAATCCATTNTNTTCCGGCACGCGTCTCAG CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCEST: gi|86064707|gb|DR360464.1|DR360464
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
EST: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAG CGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
genomic: CTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCCGGCACGCGTCTCAGgttaggaatc ... tgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGC
tgagagtatgtaaatgtaaatgaattcatcattttaatgacaatttgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAAT
ttttaat putative branch site (score: 3)
taaatgtaaatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatcctcttagcatttttgatgaagcttcgattctttataaattgagagtatgtaaatgtaaatgaattcatcattttaatgacaatttgtgttgcagCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAACGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
agaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgacaa