Sequence
atgc intronic sequence ATGC exonic sequencegtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaagcttctgactcttttaacttcatcagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G58350.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G58350.3 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 1
gtatggaacatatttttatatatatatatctttatacttcaacattgttttgaaa-----gcttctgactcttttaact-tcat-cagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
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gtatgctccactttttgatgttcttttgt--ttacttttcagttttcttttttaattctggtcttttattcttattgctgttatgcagATGGTACAAAATCAAGGTTACCATGAGATGGGAGGATGGTGAAGGCTCCTATCCCGGGATTCCGGCGCGGGTTGTTCAGTATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116429649|gb|EG472241.1|EG472241EST: ATTGCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGG ATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAAC
genomic: ATTGCGATTTATATTCATAGGTTTCATAACCTTGATCTTTTCCAGCAAGGgtatggaaca ... acttcatcagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatctttatacttcaacattgttttgaaagcttctgactcttttaacttcatcagATGGTATCAAATCAAAATCACCATGAGATGGGAGGATGGTGATAACGTAACTCGTGGTATTCCTTCACGAGTCGTGCAATATGAAG
ttttaac putative branch site (score: 2)
cttcatc CT-rich tract
ttttaactt TA-rich tract