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gtataactctctcgcctttgtttgaatttaatttcgatttcattttgaaaaatgtttagcttcttcaagctattcctgatacaatgtgtatgtttgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCGAGTCATGAGTTGCCTGTGAAGTTTTCTACTGGAGCTTCTCGTTTTCCTT
species | Arabidopsis thaliana |
transcript | AT1G58060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGAAGGTTTCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGA GATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCGEST: gi|116441495|gb|EG484087.1|EG484087
genomic: GCGAAGGTTTCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGAgtataactct ... tgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCG
EST: GCGAAGGTTTCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGA GATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCGEST: gi|164232176|gb|ES155450.1|ES155450
genomic: GCGAAGGTTTCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGAgtataactct ... tgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCG
EST: TCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGA GATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCG
genomic: TCGTTGATGATCAGATTGAACTCGCTCTCTCCTCTCTTAGAgtataactct ... tgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCG
aaatgtttagcttcttcaagctattcctgatacaatgtgtatgtttgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCGAGTCATGAGTTGCCTGTGAAGTTTTCTACTGGAGCTTCTCGTTTTCCTT
tcctgat putative branch site (score: 3)
atacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactctctcgcctttgtttgaatttaatttcgatttcattttgaaaaatgtttagcttcttcaagctattcctgatacaatgtgtatgtttgtgtttaagGATGGAGCTACGTTTGAGGCTGCACTTGATTGGCTTTGTTTGAATTTGCCGAGTCATGAGTTGCCTGTGAAGTTTTCTACTGGAGCTTCTCGTTTTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT