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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcaatctatcaacttcttcttcatatacgcttctctcgtttcaaaatttcatcgacgattaactgatttttacttggtgttttctttggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAATGGCGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G57720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124794028|gb|EH883707.1|EH883707
EST:     TTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: TTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|152035102|gb|BP844635.2|BP844635
EST:     GCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: GCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|116434996|gb|EG477588.1|EG477588
EST:     GCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: GCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|116473109|gb|EG515701.1|EG515701
EST:     TCTTCTCTCTCGCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: TCTTCTCTCTCGCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|116434993|gb|EG477585.1|EG477585
EST:     CTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: CTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|152035939|gb|BP865394.2|BP865394
EST:     GCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: GCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
EST: gi|116410809|gb|EG453401.1|EG453401
EST:     TCTCTCGCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTC                         ATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT
genomic: TCTCTCGCTTTGCTCTCTCGGAATTGTTTTTGCAGAAAGTCTCTCgtaagaatca ... tggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaatttcatcgacgattaactgatttttacttggtgttttctttggtaactagATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCTCCGTTTGAGCAATGGCGTTG
                                    tgttttcttt  CT-rich tract
                attaactgattttta  TA-rich tract