1 5' 3' | 2 5' 3' | 3 5' 3' |
...agcttgatagattgctgaaaatttactcacatttgtcatgaagacgtgcaccaactctttgaaatggtaaatgactagaagtttttatgttttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAACTTACTTGGCGTGTT
species | Arabidopsis thaliana |
transcript | AT1G57620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTTGTTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAG GTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACEST: gi|125129529|gb|EL173247.1|EL173247
genomic: ACCTTGTTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGgtaaagtaat ... tttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAAC
EST: TTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAG GTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACEST: gi|125251903|gb|EL265988.1|EL265988
genomic: TTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGgtaaagtaat ... tttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAAC
EST: ACCTTGTTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAG GTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAEST: gi|125086655|gb|EL146065.1|EL146065
genomic: ACCTTGTTATCTCCGAGGAACATTCTATCTTCCCTACTGTCTCCGTTAAGgtaaagtaat ... tttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAA
EST: CTATCTTCCCTACTGTCTCCGTTAAG GTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAAC
genomic: CTATCTTCCCTACTGTCTCCGTTAAGgtaaagtaat ... tttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAAC
gtgcaccaactctttgaaatggtaaatgactagaagtttttatgttttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAACTTACTTGGCGTGTT
ttttatt CT-rich tract
tagaagtttttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcttgatagattgctgaaaatttactcacatttgtcatgaagacgtgcaccaactctttgaaatggtaaatgactagaagtttttatgttttattgcagGTTACAGCACCTTATGGCACCGTGTTACACCACAGGGAAAATACAACAAACGGTCAGTTTGCATTCACAACCCAAGAATCAGGAACTTACTTGGCGTGTT
- - - - - - - ctgaaaa
- - - - - - - - - - - - actcaca
- - - - - - - - - - - - - - - - - - -atgaaga
- - - - - - - - - - - - - - - - - - - - - - - -gcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actagaa