1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccatatcatttgcaatcgtacctgtgagaagttttgaattccgatttctcgtctgatatatctattgttctgtgtcctttgttgtatccatgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGATGCTAA
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCGTGGTGACCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGAEST: gi|86070958|gb|DR366715.1|DR366715
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070961|gb|DR366718.1|DR366718
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070960|gb|DR366717.1|DR366717
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGGAAGATGATAATAEST: gi|164222756|gb|ES128919.1|ES128919
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: GAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|116465698|gb|EG508290.1|EG508290
genomic: GAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070962|gb|DR366719.1|DR366719
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: GATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070954|gb|DR366711.1|DR366711
genomic: GATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070959|gb|DR366716.1|DR366716
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070953|gb|DR366710.1|DR366710
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070957|gb|DR366714.1|DR366714
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|86070956|gb|DR366713.1|DR366713
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: AAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|116482409|gb|EG525001.1|EG525001
genomic: AAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATAEST: gi|116465734|gb|EG508326.1|EG508326
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
EST: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAG ATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
genomic: TCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGgtatctacat ... tgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATA
ttctcgtctgatatatctattgttctgtgtcctttgttgtatccatgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGATGCTAA
gtctgat putative branch site (score: 4)
atatatctattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatatcatttgcaatcgtacctgtgagaagttttgaattccgatttctcgtctgatatatctattgttctgtgtcctttgttgtatccatgttctaaagATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGATGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA