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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaataactcctctcctggattcagtaatgccaatgatgataagctgttctgtttttattcgtatcttcacgctcttgtctcttggatggttctttaaatgtggtagtgttatgtgttttgtatcagGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAAC

Basic information

species Arabidopsis thaliana
transcript AT1G55930.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os03g39640.1 (Oryza sativa), 3'ss of exon 1
gtaataaataactcctctcctggattcagtaatgccaatgatgataagctgttctgtttttattcgtatcttcacgctcttgtctcttggatggttctttaaatgtggtagtgttatgtgttttgtatcagGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAAC
            ||| | ||| | ||         ||   || | |  |||||  |||  |  | ||   ||     || |||||     || | |  ||| || ||||       | | | ||  |  |||| || |||||||||||||| || ||||||||||| |||||||| |||||||| |||||||||||  | ||  ||||||||||||| ||||| |||||
-----------gtccccaccttgttt-------atcatccattaaaccctgttg-gttgatggtagtccttt-----tcatgtctaaacaattgatgcttagatttggt-------tttctgttccactagGTTCGTGAGTTGGCTGAAAAGGAACCTGAAAATGGTGTTTTCAGAATGCTCCGAAGTGATGTTACTCGCTTCCTGACAACCATACTCATTGGCACAAC

upper sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA14G01920.1 (Glycine max), 3'ss of exon 1
gtaataaataactcctctcctggattcagtaatgccaatgatgataagctgttctgtttttattcgtatcttcacgctcttgtctcttggatggttctttaaatgtggtag-tgttatgtgttttgtatcagGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAAC
                                |||  ||  ||   | | | | | || ||     |   || |      ||  |   |  ||   ||  || | |  ||  ||||        ||| | |||| || |||||||| ||||| ||||||||||||||||| |||||  | ||||| |||||||||||  | ||  | ||||| ||||||||||| |||||
-------------------------------ttgcagattttgcacatcagatttattatttactatga-ttaatttagctgattaaagtttgaacctggaattctaatatctgttgatgacaatgtgtaagGTTCGTGAGTTGGCCGAAAAGGAGCCTGAAAATGGCGTCTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAAC

upper sequence: AT1G55930.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv19s0090g01820.t01 (Vitis vinifera), 3'ss of exon 1
gtaataaataactcctctcctggattcagtaatgccaatgatgataagctgttctgtttttattcgtatcttcacgctcttgtctcttggatggttctttaaatgtggtagt-gttatgtgttttgtatcagGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAAC
                             | |||   ||   ||| |  | |  |||||    ||     |  | | |||   || ||||| | || | | | |||| | || | ||| |||||| ||||||||||| ||||| |||||||| ||| |||| ||||| || ||||  ||||||||||||||||||||  | || || || || |||||||| || |||||
----------------------------cttatgt--atctagattacttttcttgtttcatctccctagtaaatgttctaacctattgga-gattttgtgattgtgttggttgatat-tgttttatatcagGTGCGTGAGTTAGCTGAAAAGGAGTCTGAGAATGGTGTCTTCAAAATGCTCCGCAGTGATGTTACTCGTTTCTTAACGACTATACTTATAGGCACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgtctcttggatggttctttaaatgtggtagtgttatgtgttttgtatcagGTGCGCGAGTTGGCTGAAAAAGAGCCTGAAAATGGCGTTTTCAGGATGCTCCGCAGTGATGTTACCAGATTTTTGACAACCATACTTATTGGAACAAC
                  ttctttaaat  TA-rich tract