Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttgttttcttatgaaattgattgtttttgtttaaccggaaattgatccggaaccggtttggtaaaatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G54780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA20G37520.1 (Glycine max), 3'ss of exon 1
gtgagttttttgttttcttatgaaattga---ttgtttttgtttaaccggaaattgatccg-----gaaccggtttg---gtaaaatttgg-------cagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA
    ||| | ||   |   |  ||| |||    ||         |||   |   | |         |||  | ||||   ||| ||| |||       ||||| ||||| ||||| ||||||||||| ||||| || |||||    ||||| |||||| | |||||||| ||||| ||||||||||| ||  |  | || |
-catgttctctgccatgcaactaaagtgaagcatgaaaggaccaaacaaaatgctaaatgctaaatgaaatgttttgatagtataatgtggttgaatgcagAGCAAAGCTGATGCATTTGAGTATGCTGACCAAGTCTTGGAGCGTTGGTACCCTTCTGTAGAAGAAGGGAACAAGAAGGGTATTGTGGTGCTTGTCACGA

upper sequence: AT1G54780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA10G29810.1 (Glycine max), 3'ss of exon 1
-gtgagttttttgttttcttatgaaattg--attgtttttgt-----ttaaccggaaattgatccggaac----cggtttggtaaaat--ttg---gcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA
  |      |||  | |   ||| || |   || ||   ||        || |  ||    |   | ||      | ||  ||||  |  |||   |||||| ||||| ||||| ||||||||||| ||||| || |||||    ||||| |||||| | |||||||| ||||| ||||| ||||| ||  |  | || |
acttgtccattttctctgccatggaactaaaatggtgcatgaaaggaccaaacaaaatgctaaatgaaatgttttgattgtgtaacgtggttggttgcagAGCAAAGCTGATGCATTTGAGTATGCTGACCAAGTCTTGGAGCGTTGGTACCCTTCTGTAGAAGAAGGGAACAACAAGGGCATTGTGGTGCTTGTCACGA

upper sequence: AT1G54780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0128g00050.t01 (Vitis vinifera), 3'ss of exon 1
---gtgagttttttgttttct----tatgaaatt---gattgtttttgtttaa----ccggaaatt-gatccggaaccggtttggtaaaat--ttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA
    ||   | | ||  |       |||||||||   |||||   |||| |||      |||  || | |  | ||   ||    | || |  || |||||||||||||||||| ||||| ||||| ||||| |||||||| |  ||||||||  | ||||||||||| | ||||||||||||||||||  |  | || |
gtcttggcatatgtgaatagaaaaatatgaaatttaagattgcaattgtgtaagggtttggattttaggtatgaaaattgtgatttgaattggtttgcagAGTAAAGCAGATGCCTTTGAATATGCTGACCAAGTTTTGGAGAGGTGGTATCCCACAATTGAAGAAGGCAGCAATAAGGGTATTGTTGTGCTTGTCACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125058872|gb|EL127549.1|EL127549
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGA
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGA
EST: gi|86025176|gb|DR320929.1|DR320929
EST:     ATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAKAGCTCACC                         AGTAAAGCAGATGCGTTTTGAGTA
genomic: ATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAA-AGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTT-GAGTA
EST: gi|86025177|gb|DR320930.1|DR320930
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124758059|gb|EH848189.1|EH848189
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATG
EST: gi|86025158|gb|DR320911.1|DR320911
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTT
EST: gi|86081744|gb|DR377503.1|DR377503
EST:     TTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: TTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124814620|gb|EH899486.1|EH899486
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCG
EST: gi|86025160|gb|DR320913.1|DR320913
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|116431679|gb|EG474271.1|EG474271
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|125052152|gb|EL124042.1|EL124042
EST:     ATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: ATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025194|gb|DR320947.1|DR320947
EST:     AATACAGAAAGAAACTGAGAYTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025159|gb|DR320912.1|DR320912
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025175|gb|DR320928.1|DR320928
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAATCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124757572|gb|EH847702.1|EH847702
EST:     AACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|125066142|gb|EL133121.1|EL133121
EST:     TCACTGTCCGAAAGCTCACC                         AGTAAGGCAGATGCGTTTGGGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: TCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025186|gb|DR320939.1|DR320939
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAA-TGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025183|gb|DR320936.1|DR320936
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAATCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025173|gb|DR320926.1|DR320926
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGA
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGA
EST: gi|86077813|gb|DR373570.1|DR373570
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|125250589|gb|EL264674.1|EL264674
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTG
EST: gi|125226345|gb|EL240430.1|EL240430
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGG
EST: gi|86025179|gb|DR320932.1|DR320932
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCAC-                         AGTAAAGCAGATGCGTTTGAGTATGCAG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAG
EST: gi|125042776|gb|EL115045.1|EL115045
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGT
EST: gi|86025169|gb|DR320922.1|DR320922
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCAAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025189|gb|DR320942.1|DR320942
EST:     -ARCCAGNAAGAA-CTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTT
genomic: TA-C-AGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTT
EST: gi|125079880|gb|EL141696.1|EL141696
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTA
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTA
EST: gi|124790965|gb|EH880644.1|EH880644
EST:     CAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: CAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025168|gb|DR320921.1|DR320921
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025187|gb|DR320940.1|DR320940
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAG
EST: gi|86025192|gb|DR320945.1|DR320945
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGT
EST: gi|124915239|gb|EH989113.1|EH989113
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTA
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTA
EST: gi|125121390|gb|EL168594.1|EL168594
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAG
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAG
EST: gi|125180082|gb|EL197334.1|EL197334
EST:     TCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: TCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124947075|gb|EL022941.1|EL022941
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTAGAGCATGCAGACCAGGTTTTGGAAAAAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTT-GAGTATGCAGACCAGGTTTTGGAAAAAT
EST: gi|86025164|gb|DR320917.1|DR320917
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025190|gb|DR320943.1|DR320943
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGA
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGA
EST: gi|124705410|gb|EH796812.1|EH796812
EST:     TGTCCGAAAGCTCACC                         AGTAAGGCAGATGCGTTTGGGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: TGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025167|gb|DR320920.1|DR320920
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124823057|gb|EH907923.1|EH907923
EST:     TCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: TCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|86025180|gb|DR320933.1|DR320933
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTAT
EST: gi|124978965|gb|EL052074.1|EL052074
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACC
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACC
EST: gi|86025178|gb|DR320931.1|DR320931
EST:     AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAATCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: AATACAGAAAGAAACTGAGACTCAATTTCATCACTGTCCGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
EST: gi|124914422|gb|EH988296.1|EH988296
EST:     CGAAAGCTCACC                         AGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT
genomic: CGAAAGCTCACCgtgagttttt ... aatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttttgtttaaccggaaattgatccggaaccggtttggtaaaatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA
     ttttgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttttgttttcttatgaaattgattgtttttgtttaaccggaaattgatccggaaccggtttggtaaaatttggcagAGTAAAGCAGATGCGTTTGAGTATGCAGACCAGGTTTTGGAAAAATGGTATCCTTCTATTGAAGAAGGTAACAATAAGGGTATTGTTGTTTTGATAACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG