Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttttttctctgatcttcgagttctgataattgctcttttttctctggctttgttatcgataatttctctggattttctttctggggtgaatttttgcgcagAGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGACTTCTCACAACTTGGGATCTTACGTTGCTGGCAAATGGCAAGCCAACGG

Basic information

species Arabidopsis thaliana
transcript AT1G54100.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486592|gb|EG529184.1|EG529184
EST:     GATCAACCATTAG                         AGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGA
genomic: GATCAACCATTAGgtgatttttt ... ttttgcgcagAGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGA
EST: gi|164046346|gb|EL986747.1|EL986747
EST:     GAAGCTCATTTCTTCGATACGATCAACCATTAG                         AGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGGGATTGGGCTGA
genomic: GAAGCTCATTTCTTCGATACGATCAACCATTAGgtgatttttt ... ttttgcgcagAGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGA
EST: gi|116486590|gb|EG529182.1|EG529182
EST:     GATCAACCATTAG                         AGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGA
genomic: GATCAACCATTAGgtgatttttt ... ttttgcgcagAGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttgttatcgataatttctctggattttctttctggggtgaatttttgcgcagAGATGGGTTCGGCGAACAACGAGTACGAGTTTCTGAGTGAGATTGGGCTGACTTCTCACAACTTGGGATCTTACGTTGCTGGCAAATGGCAAGCCAACGG
                                            tttttgc  CT-rich tract
            ataatttct  TA-rich tract