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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattcccgacttcatcgttaacataacaaaactactctgctttgttatttttatttcctaggaatgtttaacatttttttattcactaattgctgacctggaagCCGAAAAGGCATGGTTGCCGTCGATCCCGCCAAATCTACAACCAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGG

Basic information

species Arabidopsis thaliana
transcript AT1G53990.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttcctaggaatgtttaacatttttttattcactaattgctgacctggaagCCGAAAAGGCATGGTTGCCGTCGATCCCGCCAAATCTACAACCAAACAACGGTAACAATCAATTTACCTATGGAGTAAGTTTTGCTTCTGCTGGCGCCGG
                                         tgctgac  putative branch site (score: 2)
             aatgtttaacattttt  TA-rich tract