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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatctttttctccgaatcttatgcaaaaatttccccttttccgtatcagggctagatttggatttgtgggtactgttcaattcacgaatcgccaatgattggtacttgccctttgagtgttaacacttttgattgaatcgagattgttattaaagtttgatccttttgatgccaatgcagGTCTTTGTTATTGAAAAATCGATTCTTTGTTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G53040.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876982|gb|AU237813.1|AU237813
EST:     ATAGTGCGTTAATCATTCAAAAG                         GTCTTTGTTATTGAAAAATCGATTCTTTGTTCTG
genomic: ATAGTGCGTTAATCATTCAAAAGgtattatctt ... gccaatgcagGTCTTTGTTATTGAAAAATCGATTCTTTGTTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgattgaatcgagattgttattaaagtttgatccttttgatgccaatgcagGTCTTTGTTATTGAAAAATCGATTCTTTGTTCTG
                                      ttttgat  putative branch site (score: 4)
                 attgttattaaagttt  TA-rich tract