Sequence
atgc intronic sequence ATGC exonic sequence...ttatctgtagaatttgaaccaaactctaaaaggtttgtctttattttatttgtattatggatgattccaagtaagagctgctgtctttttttgtttgcagATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTGAATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G50570.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164192966|gb|ES075999.1|ES075999EST: ATAGCTTTTGCTTCTGATCAG ATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCG
genomic: ATAGCTTTTGCTTCTGATCAGgtaaaaatac ... ttgtttgcagATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCG
EST:
gi|124888767|gb|EH967669.1|EH967669EST: TTTATAGCTTTTGCTTCTGATCAG ATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTA
genomic: TTTATAGCTTTTGCTTCTGATCAGgtaaaaatac ... ttgtttgcagATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatttgtattatggatgattccaagtaagagctgctgtctttttttgtttgcagATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTGAATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTC
ctgtctttttttgttt CT-rich tract
tttttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatctgtagaatttgaaccaaactctaaaaggtttgtctttattttatttgtattatggatgattccaagtaagagctgctgtctttttttgtttgcagATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTGAATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - ccaaact
- - - - - - - - - - - - -ctaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtaa