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...gtttgggtattgaaaagcacgtcagtactattgtcactctctctttactaagtaatacaatgtgatatttttggtgatgagatggttcaattatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAGGAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGA
species | Arabidopsis thaliana |
transcript | AT1G49670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG GTAGAGCTCTCTGNTTAGCTCTTGCAGAGAAAGGAGTTTTTGEST: gi|125177094|gb|EL196395.1|EL196395
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTG
EST: CCTGGTTTATCCGCCTCTCGTCACTGGCGGNGCCTCTGGGATCG GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGEST: gi|86072169|gb|DR367926.1|DR367926
genomic: CCTGGTTTATCCG-CTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
EST: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGEST: gi|86072168|gb|DR367925.1|DR367925
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
EST: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCG GTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
genomic: GATCAAGCCTGGTTTATCCGCTCTCGTCACTGGCGGCGCCTCTGGGATCGgtaaaaaaaa ... ttatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCG
tactaagtaatacaatgtgatatttttggtgatgagatggttcaattatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAGGAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGA
aatgtgatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgggtattgaaaagcacgtcagtactattgtcactctctctttactaagtaatacaatgtgatatttttggtgatgagatggttcaattatgtgtagGTCGAGCTCTCTGCTTAGCTCTTGCAGAGAAAGGAGTTTTTGTAACAGTCGCTGATTTTTCGGAGGAGAAAGGACAAGAGACTACTTCGCTTGTTCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA