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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagatagatagatagagatctttcttaattaatcctattgaattgagctttgaaatgaacagGTTAATATAATTGATACTCCTGGTCATGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTGTGCAGTGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G45332.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G45332.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 1
---------------------------------gtgagcagatagatagatagagatctttcttaattaatcctattgaattgagctttgaaatgaacagGTTAATATAATTGATACTCCTGGTCATGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTGTGCAGTGTTG
                                  |  |  |     |  | ||| |        ||  ||    | | |        |||   |   |||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| ||||| || |||||||
ttgcaccctttttgctagatgtttatatattcttttggttgcccattcaaaagaaaaaaaaaaaaaagaagaaaaatcatccagaaattgttttttgcagGTTAACATAATTGACACTCCTGGTCATGTCGACTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTCCTTTGTAGTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874474|gb|AU235305.1|AU235305
EST:     GTATCACCATCCAATCAGCCGCTACCTACTGTACTTGGAAGGATTACAAG                         GTTAATATAATTGGTACTCCTGGTCATGTTGACTTCACCATTGAAGTGGAG
genomic: GTATCACCATCCAATCAGCCGCTACCTACTGTACTTGGAAGGATTACAAGgtgagcagat ... aaatgaacagGTTAATATAATTGATACTCCTGGTCATGTTGACTTCACCATTGAAGTGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagatagagatctttcttaattaatcctattgaattgagctttgaaatgaacagGTTAATATAATTGATACTCCTGGTCATGTTGACTTCACCATTGAAGTGGAGAGGGCTTTACGTGTACTAGACGGTGCGATTCTAGTCCTGTGCAGTGTTG
                   aattaat  putative branch site (score: 3)
          atctttcttaattaat  TA-rich tract