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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattgaaaaagtgttgattttgattctgtgagcgggaaaaattgattgattgatgtgtcctactgtcaatttagtttaatgggtttgtctttgtttcagGTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA

Basic information

species Arabidopsis thaliana
transcript AT1G43190.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124929761|gb|EL007278.1|EL007278
EST:     CTTTCCTCTCTCTTTGTCTTCTCTCAG                         GTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTC
genomic: CTTTCCTCTCTCTTTGTCTTCTCTCAGgcaagccaaa ... tttgtttcagGTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgattgatgtgtcctactgtcaatttagtttaatgggtttgtctttgtttcagGTTTTGTAATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAA
                             gtttaat  putative branch site (score: 4)
                                       tttgtctttgtttc  putative PPT
                     tcaatttagtttaat  TA-rich tract