1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttcttcttcttcagcatatttacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAG
species | Arabidopsis thaliana |
transcript | AT1G36390.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCEST: gi|86049255|gb|DR345010.1|DR345010
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCEST: gi|86049254|gb|DR345009.1|DR345009
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTRAAAACCEST: gi|86049252|gb|DR345007.1|DR345007
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCEST: gi|86049256|gb|DR345011.1|DR345011
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCEST: gi|86049253|gb|DR345008.1|DR345008
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAACEST: gi|86049249|gb|DR345004.1|DR345004
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAA-C
EST: ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCATCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC
genomic: ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGC-TCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC
tacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAG
ttctaat putative branch site (score: 2)
aatctgttataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttcttcttcagcatatttacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT