Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86049257|gb|DR345012.1|DR345012EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST:
gi|86049255|gb|DR345010.1|DR345010EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST:
gi|86049254|gb|DR345009.1|DR345009EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTRAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST:
gi|86049252|gb|DR345007.1|DR345007EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST:
gi|86049256|gb|DR345011.1|DR345011EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACC
EST:
gi|86049253|gb|DR345008.1|DR345008EST: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAAC
genomic: CACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAA-C
EST:
gi|86049249|gb|DR345004.1|DR345004EST: ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCATCACCAA ACTAATAACAATGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC
genomic: ACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGC-TCACCAAgtaagttctt ... taatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAG
ttctaat putative branch site (score: 2)
aatctgttataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcttcttcttcagcatatttacatgttctttgcttttaaagcttcttctaattcgaatctgttataatttgtagACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT