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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtattaacaacttcgcttccaattttgtgaatctccatatccagtttcgtaattttgaaattctttgattctgttgtttagGTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAAC

Basic information

species Arabidopsis thaliana
transcript AT1G36050.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124757441|gb|EH847571.1|EH847571
EST:     TTATGTTCCTTCTCTTCTTCTCCGAGCTCC                         GTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAA
genomic: TTATGTTCCTTCTCTTCTTCTCCGAGCTCCgtacgtatta ... tgttgtttagGTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAA
EST: gi|125258859|gb|EL272944.1|EL272944
EST:     CACTCTCCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCC                         GTCTTTATCTTCATACAGTCACCGAGACG
genomic: CACTCTCCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCgtacgtatta ... tgttgtttagGTCTTTATCTTCATACAGTCACCGAGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatctccatatccagtttcgtaattttgaaattctttgattctgttgtttagGTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAAC
                                    ctttgat  putative branch site (score: 5)
                                          ttctgtt  CT-rich tract
                       taattttgaaattctt  TA-rich tract