1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaatgatagtatcttatgatgtgcatcagaagcatacactagttacaaactgtaagtgtaaatgttgatttggttcacattttgtgtttggtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCTTGTAGAGATGGTA
species | Arabidopsis thaliana |
transcript | AT1G34430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATGCTCTCTACAAGAAG ATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCAEST: gi|124710063|gb|EH801465.1|EH801465
genomic: TGATGCTCTCTACAAGAAGgtgagtgtgt ... gtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCA
EST: GAGTCGGTTACACGATTAGTACGGATGCTCTTGATGCTCTCTACAAGAAG ATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGG
genomic: GAGTCGGTTACACGATTAGTACGGATGCTCTTGATGCTCTCTACAAGAAGgtgagtgtgt ... gtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGG
caaactgtaagtgtaaatgttgatttggttcacattttgtgtttggtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCTTGTAGAGATGGTA
tgttgat putative branch site (score: 4)
tttgttt putative PPT
taaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgatagtatcttatgatgtgcatcagaagcatacactagttacaaactgtaagtgtaaatgttgatttggttcacattttgtgtttggtttgtttagATTAAGTCGAAAGGTGTGACAATGACGGCACTTTTAGCAAAGGCAACTGCACTTGCACTGGCGAAACATCCAGTTGTAAACTCGTCTTGTAGAGATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - atcagaa
- - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - acaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatttgg