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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagaatctttcttcgtattgcatcatttggtcttgaggaatttagaatcacaagtctagataaattctcggtatttgtagaatttcatttgaattctgtgagaatttgagattccataaactatactcatatacattggttttttctcatctggcattttttggttacagGAACCTTGGATTATGGGTTTAATGGCGTTTCATGCTTTGTTGTTACTAGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTCCTCTTCTTAT

Basic information

species Arabidopsis thaliana
transcript AT1G34350.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164093262|gb|ES052291.1|ES052291
EST:     TTTTCCACGCCATTGATTGGAAG                         GAACCTTGGATTATGGGTTTAATGGCGTTTCATGCTTTGTTG
genomic: TTTTCCACGCCATTGATTGGAAGgtaatgagaa ... ttggttacagGAACCTTGGATTATGGGTTTAATGGCGTTTCATGCTTTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaactatactcatatacattggttttttctcatctggcattttttggttacagGAACCTTGGATTATGGGTTTAATGGCGTTTCATGCTTTGTTGTTACTAGTGACTCTTCTTTCTAGAAGGCATCTCAACTTCCATATGTTCCTCTTCTTAT
                                       catttttt  CT-rich tract
             atatacatt  TA-rich tract