1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acattcaaatttactgttgcttagcgatcgcgatcgaattcatatgtttttcgattctgtgatatcttcatgactcttgattcgtgactcgattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAGTTAGTTCAGAAAAATGGCTCCAGTGAGTA
species | Arabidopsis thaliana |
transcript | AT1G34020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCACCTTYNGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAG CGGAAAGTGAGTCTTCTGGAGAATGGGAGATTGAAGAAGTAAGAGATTCACEST: gi|86044313|gb|DR340068.1|DR340068
genomic: GATCACC-TCCGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAGgtaataactc ... gattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCAC
EST: CGATCACCTCCGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAG CGGAAAGTGAGTCTTCTGGAGAATGGGAGATTGAAGAAGTAAGAGATTCACEST: gi|86044311|gb|DR340066.1|DR340066
genomic: CGATCACCTCCGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAGgtaataactc ... gattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCAC
EST: CGATCACCTCNGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAG CGGAAAGTGAGTCTTCTGGAGAATGGGAGATTGAAGAAGTAAGAGATTCAC
genomic: CGATCACCTCCGCACGATTCATTTCCTATTTGCATTTTTCACCTCTCTAGgtaataactc ... gattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCAC
gtttttcgattctgtgatatcttcatgactcttgattcgtgactcgattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAGTTAGTTCAGAAAAATGGCTCCAGTGAGTA
tcttgat putative branch site (score: 4)
ttcttt putative PPT
attcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattcaaatttactgttgcttagcgatcgcgatcgaattcatatgtttttcgattctgtgatatcttcatgactcttgattcgtgactcgattctttagCGGAAAGTGAGTCTTCTCGAGAATGGGAGATTGAAGAAGTAAGAGATTCACTGATTGAGGAAGAGAGAAAGTTAGTTCAGAAAAATGGCTCCAGTGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- attcaaa
- - - - - - -ctgttgc