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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcttttattaataatacatatacgatccaatcctctagttatattagatactatacaaaagcattttttttttgtttttgtagATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA

Basic information

species Arabidopsis thaliana
transcript AT1G33280.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33280.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA12G00540.1 (Glycine max), 3'ss of exon 1
-------------gtacgttcttttattaataatacatatacgatccaatcctctagttatattagatactatacaaaagcattttttttttgtttttgtagATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA
               |       || | |  |||   || |   |    |  | |   ||| ||   |  | |   |    | ||||||  ||       ||| ||||| | ||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || || || ||||| |||||||| ||  | |||||  |
attttacatattgaaataaaacgttttcatcaatttttacatactttt-tattttcactatttttagtgttttctcatgttaattttttcatgacaa-acagAAAGATGTAGAATTGGATCTACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCCACAGGTTCAAGGACTAATAGAGCAACGAA

upper sequence: AT1G33280.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G36820.1 (Glycine max), 3'ss of exon 1
----gtacgttcttttattaataatacatatacgatc---caatcctctagttatattagatactatacaaaagcatttt---ttttttgtt-tttgtagATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA
      ||  | | || |||| | |  | |||   |     | |  ||   ||  | ||  |    |        || ||   ||||| ||       ||| ||||| | ||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || || || ||||| |||||||| ||  | |||||  |
gagaaaacaatatattcttaaaattttacatattgttacatatttttcatttttcactatttttattgtttgcttatgttaaatttttcgtgacaaacagAAAGATGTAGAATTGGATCTACTCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGATAGAAAGTACCCTACAGGTTCAAGGACTAATAGAGCAACGAA

upper sequence: AT1G33280.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv18s0089g01120.t01 (Vitis vinifera), 3'ss of exon 1
--gtacgttcttttattaataatacatatacgatccaatcctctagttatatta-------gatactatacaaaagc--attttttttttgtttttgtagATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA
    |        |||   |||||  |||  | |  | |  | | | |  ||||       |||  | ||    ||   ||||| | | | | | || ||| ||||| |  || || || || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||  | || ||  |
caacagccaaacatatccctaatatttattggctatacttttgttgatgaattattattttgatgttgtaacttagttgattttgtgtatatgtatgcagAGAGATGTAGGATTGGGTCCACACCACAAAATGAGTGGTACTTCTTCAGCCACAAGGATAGGAAGTATCCAACAGGGTCAAGGACTAATAGAGCCACAAA

upper sequence: AT1G33280.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S102_187V6.1 (Physcomitrella patens), 3'ss of exon 1
---------------------gtacgttcttttatt---aataatacatatac-gatccaatcctctagttatattagatact---atacaaaag-cattttttttttgtttttgt---agATAGATGCAAAATAGGA----TCAACGCCA-----CAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA-
                     | || |  ||   ||   |||    |  | |  ||     |  | | |   |  | ||||     ||||  | |  |||   |||||||     |   ||    |||||  || ||     ||| | ||      || | ||| ||||| ||||||||||||||||||| |||||||||    |||    |  |||| || || |||   
gcatgaacatgctcatttgaaggacatatttgagtttcgaatttctcccacatagagtttttgttttgggattggtggatatcttgatactgatgatattcaatttttgtggcgatgtcaggggtatgcagGATCGGGGACGTCACCACCGAAGACCAGAGTGACTGGTACTTCTTCAGCCACAAGGATAAGAAATATCCTTGCGGGAACCGTGCAAATCGAGCCACCGCC

upper sequence: AT1G33280.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S182_37V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------------gtacgttcttttattaataatacatatacga--------tccaatcctctagttatatta-gatactatacaaaagcattttt------tttttgtttttgt-agATAGATGCAAAATAGG---------ATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA
                                                                                         | | ||   || | |  || | |    | |        ||   || |||| | |||  | || |   | ||  || |||         || |||      | |||    ||||  || ||         | ||  ||  |||| ||| ||||| ||||||||||||||||||| ||| ||||| |||||     |  | |||||         
gtaagcatcggaatcctgaaggtagtatggtgcagtgttcaacctcctcatctagtttcgtcaaaaaataaacatttaaaacagtactatccattgaattgtgatcaacataagctcaagagcatgttctcctcatctattgatagcatgaaatggtccagcagtattgacaaaaacttgttgcaccgatcagAAGTGTGCAGGATCGGGGACGACGCACCAGAGCATCAAAGTGACTGGTACTTCTTCAGCCACAAGGATAAGAAGTATCCCACAGGAAACCGTGCCAACCG---------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcctctagttatattagatactatacaaaagcattttttttttgtttttgtagATAGATGCAAAATAGGATCAACGCCACAAAATGAGTGGTATTTCTTCAGCCACAAGGATAGGAAATATCCGACAGGGTCAAGGACAAACCGTGCAACCCA
                                 cattttttttttgttt  CT-rich tract
          ttatattagatactat  TA-rich tract