1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcttcattttctcatggatttgtgtgttttagtaacagttatgattgaggaaggaacatgattttgttgtgtgttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGATAACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAAC
species | Arabidopsis thaliana |
transcript | AT1G33270.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAG GAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGEST: gi|116475014|gb|EG517606.1|EG517606
genomic: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAGgttcttcatt ... gttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTG
EST: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAG GAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGEST: gi|86059729|gb|DR355486.1|DR355486
genomic: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAGgttcttcatt ... gttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTG
EST: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAG GAAACTACTCCTTTAGCAGGATCTTCTGCTG
genomic: CTTATCATCTTGGAGTTGCTCAGTTGCTTATTGAAAAGGGTTACATAAAGgttcttcatt ... gttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTG
tttagtaacagttatgattgaggaaggaacatgattttgttgtgtgttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGATAACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAAC
ttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttcattttctcatggatttgtgtgttttagtaacagttatgattgaggaaggaacatgattttgttgtgtgttgattcagGAAACTACTCCTTTAGCAGGATCTTCTGCTGGTGCTATAGTCTGTGCTGTGATAACCTCAGGAGCTACTATGCGAGAAGCCCTTGAAGCTACTAAGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA