Sequence
atgc intronic sequence ATGC exonic sequence...cccatttttaagaataaaaaaaaacaataaaaaaattagagaaatggttcgttccaatataagtatttgcaacaaaatgaattttgtttccttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACTTACTA
Basic information
species | Arabidopsis thaliana |
transcript | AT1G32860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164075428|gb|ES059776.1|ES059776EST: CGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACG GGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATAGTT
genomic: CGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattct ... cttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCAT-GTT
EST:
gi|86086383|gb|DR382142.1|DR382142EST: CGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACG GGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTA
genomic: CGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGgtaagattct ... cttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttcgttccaatataagtatttgcaacaaaatgaattttgtttccttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACTTACTA
ttttgtttccttatt CT-rich tract
aaaatgaattttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccatttttaagaataaaaaaaaacaataaaaaaattagagaaatggttcgttccaatataagtatttgcaacaaaatgaattttgtttccttattgcagGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACTTACTA
- - - - - -gaataaa
- - - - - - - -aaaaaaa
- - - - - - - - - aaaaaac
- - - - - - - - - - - - - - - - - - -agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa