1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgaaaagaaagattgtacatttgaaagcttgaattttacttgatgagactactttatatccatatcattcgttttgattgtgtgtgtgtgggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGCTCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCG
species | Arabidopsis thaliana |
transcript | AT1G32790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGG AAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGEST: gi|86051683|gb|DR347438.1|DR347438
genomic: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGGgtaagagaca ... ggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATG
EST: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGG AAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGEST: gi|164037689|gb|ES143874.1|ES143874
genomic: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGGgtaagagaca ... ggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATG
EST: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGG AAGAAGAGTTTTGGTCAAGGGAAACG
genomic: CTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGGgtaagagaca ... ggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACG
agactactttatatccatatcattcgttttgattgtgtgtgtgtgggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGCTCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCG
ttttgat putative branch site (score: 4)
actttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaagaaagattgtacatttgaaagcttgaattttacttgatgagactactttatatccatatcattcgttttgattgtgtgtgtgtgggtggtgtagAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGCTCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- aaaagaa
- - - - - - - - - - -tgaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatatc