1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttaaaagcaaaattgtagtatcataaattgttttcgtccttttgtaacacatttattacaattactgtctgtaacactactacactaatcttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGACCAAAGCCTTCAAGAGGAAAATAAAGCAGAAGC
species | Arabidopsis thaliana |
transcript | AT1G31880.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAG CCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCEST: gi|116385347|gb|EG427939.1|EG427939
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAG CCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCEST: gi|116385355|gb|EG427947.1|EG427947
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCGG CCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCEST: gi|116385348|gb|EG427940.1|EG427940
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAG CCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCEST: gi|116385352|gb|EG427944.1|EG427944
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAG CCATTGATGGTCTATTTATAGACGTAGGCTCAGAACTAACCCCACTCGTGCEST: gi|116385342|gb|EG427934.1|EG427934
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
EST: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAG CCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
genomic: TCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGgtgagtttat ... ttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGC
aacacatttattacaattactgtctgtaacactactacactaatcttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGACCAAAGCCTTCAAGAGGAAAATAAAGCAGAAGC
cactaat putative branch site (score: 2)
tcttctctgc CT-rich tract
atttattacaattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaagcaaaattgtagtatcataaattgttttcgtccttttgtaacacatttattacaattactgtctgtaacactactacactaatcttctctgcagCCATTGATGGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGACCAAAGCCTTCAAGAGGAAAATAAAGCAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - aagcaaa
- - - - - - - - - - -cataaat
- - - - - - - - - - - - - - - - - - - - - - taacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa