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...ctcaaaatgtagatgagagcatgcataagttgtgtggagactgagcttaatgtgtagtgtaattgacaattagttttgtgggctttcctttgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAACCAAGAGGCTGTTCTTTTCAAATGATTGGTAGTAGTTATATTATGCTT
species | Arabidopsis thaliana |
transcript | AT1G31420.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAG GAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAEST: gi|125229246|gb|EL243331.1|EL243331
genomic: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAGgttcttataa ... tgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACA
EST: CTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAG GAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAEST: gi|124877536|gb|EH956973.1|EH956973
genomic: CTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAGgttcttataa ... tgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACA
EST: CTTCCTCCTCTCGGATCCATTTTTAGAG GAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAEST: gi|116419338|gb|EG461930.1|EG461930
genomic: CTTCCTCCTCTCGGATCCATTTTTAGAGgttcttataa ... tgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACA
EST: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAG GAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAEST: gi|124778362|gb|EH868305.1|EH868305
genomic: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAGgttcttataa ... tgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACA
EST: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAG GAGTCTAGTTTCTTACTTGAA
genomic: TTCTTCTTCCTCTGTCTCAATTCTTCCTCCTCTCGGATCCATTTTTAGAGgttcttataa ... tgtttttcagGAGTCTAGTTTCTTACTTGAA
cttaatgtgtagtgtaattgacaattagttttgtgggctttcctttgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAACCAAGAGGCTGTTCTTTTCAAATGATTGGTAGTAGTTATATTATGCTT
aattgac putative branch site (score: 3)
ctttcctttgtttttc putative PPT
aattagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaaaatgtagatgagagcatgcataagttgtgtggagactgagcttaatgtgtagtgtaattgacaattagttttgtgggctttcctttgtttttcagGAGTCTAGTTTCTTACTTGAACATAGACATGGAATCAACTAATAACTGACAACCAAGAGGCTGTTCTTTTCAAATGATTGGTAGTAGTTATATTATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT