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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgaaattgaacattttcgtcactcttgggatttcgatggatttgaattttgtgttccaatggaatgtttttgcagGTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATTTCGAAGCGTACAAGTCTAAAGTGTATTCTCTTACTGTCCCGCTAAAACT

Basic information

species Arabidopsis thaliana
transcript AT1G31410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86067343|gb|DR363100.1|DR363100
EST:     ACCGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAGCTG                         GTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATT
genomic: ACCGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAGCTGgtgcgtgaaa ... gtttttgcagGTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATT
EST: gi|125038700|gb|EL110969.1|EL110969
EST:     AGAATGAAATCAACACAGAAACTGTAGCTG                         GTGAAGAGAATCTAAATGAAGTTG
genomic: AGAATGAAATCAACACAGAAACTGTAGCTGgtgcgtgaaa ... gtttttgcagGTGAAGAGAATCTAAATGAAGTTG
EST: gi|19875910|gb|AU236741.1|AU236741
EST:     ACCGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAGCTG                         GTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATT
genomic: ACCGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAGCTGgtgcgtgaaa ... gtttttgcagGTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATT
EST: gi|124791259|gb|EH880938.1|EH880938
EST:     CGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAGAACTG                         GTGAAGAGAATCTAAATGAAGTTGA
genomic: CGCCGATTGTCGTTACAGAGAATGAAATCAACACAGAAACTGTAG--CTGgtgcgtgaaa ... gtttttgcagGTGAAGAGAATCTAAATGAAGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcttgggatttcgatggatttgaattttgtgttccaatggaatgtttttgcagGTGAAGAGAATCTAAATGAAGTTGAAGATGAAGAAAAACTGGAAGCTGATTTCGAAGCGTACAAGTCTAAAGTGTATTCTCTTACTGTCCCGCTAAAACT
                                            tgttttt  CT-rich tract
                   atttgaatttt  TA-rich tract