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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtgatttcgattttttttttccagattcttcgttaagatttggatctcagattcagtttaagcgtaattaactgataacactgttattttattttctgcttacagAATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G31070.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31070.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv00s2207g00010.t01 (Vitis vinifera), 3'ss of exon 1
gttcgtgatttcgattttttttttccagattcttcgttaagatttggatctcagattcagttt----aagcgtaattaactgataacactgttattttattttctgcttacagAATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAG
         |   |||  |  ||    |    ||||     | ||   |||  ||||  ||||    |||||| |||   |   || |    |  | | ||||| ||    ||| ||| |||||| |||| ||||||||||||||| | ||||||||||  |||||||
---------tataattaatgattattggtcaattcgaatttaattatttctatgattttgttttgtaaagcgtgatttggtttaaataagtgtgctgttttttccgc----agAGTTTAGATCTTTCAAGGATAGATCGGATCATTCGGTGTTCACTTCGATCTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcagtttaagcgtaattaactgataacactgttattttattttctgcttacagAATTTGGATCTTCCAAGAATAGATCGGATCATTAGATGTTCACTTCACTCTCAAG
                      tgataac  putative branch site (score: 2)
                                    ttttattttctgctt  putative PPT
                        ataacactgttatttt  TA-rich tract