1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttctaattgtgatctgtcttttagcaaaataaagtttcgtttttgctgaatcgttggggttttagtagttgatctgatcttgtctgctttttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTA
species | Arabidopsis thaliana |
transcript | AT1G30230.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTEST: gi|164035792|gb|ES198651.1|ES198651
genomic: CATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGGAAAAGGTTCGAGCEST: gi|152037815|gb|BP798735.2|BP798735
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGC
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG CEST: gi|152037815|gb|BP798735.2|BP798735
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcag-
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG CEST: gi|164050942|gb|ES115761.1|ES115761
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcag-
EST: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTEST: gi|125280556|gb|EL294641.1|EL294641
genomic: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCT
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTACGGAAACTATGGCAGCATTCCCTAAACCTTAAEST: gi|164195191|gb|ES055765.1|ES055765
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTT-CGGAAACTATGGCAGCATTCCCTAA-CCTTAA
EST: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACTATGGEST: gi|86078823|gb|DR374580.1|DR374580
genomic: GCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGG
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTEST: gi|125045287|gb|EL117556.1|EL117556
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGEST: gi|164212232|gb|ES164156.1|ES164156
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAG
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACEST: gi|116416034|gb|EG458626.1|EG458626
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAAC
EST: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAG TGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
genomic: CTGCCTCCTCCTTCACTCTTCATCTTCAAAGACTGCGCCTTTTAGCTCAGgtttgttctt ... tttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACT
gctgaatcgttggggttttagtagttgatctgatcttgtctgctttttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTA
atctgat putative branch site (score: 4)
tcttgtctgcttttt CT-rich tract
tttttatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctaattgtgatctgtcttttagcaaaataaagtttcgtttttgctgaatcgttggggttttagtagttgatctgatcttgtctgctttttatatcagTGAAAAAGGTTCGAGCTTCGGAAACTATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTTCTCACTCGCAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatct