1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCAT
species | Arabidopsis thaliana |
transcript | AT1G29200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408812|gb|EG451404.1|EG451404
genomic: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408813|gb|EG451405.1|EG451405
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408811|gb|EG451403.1|EG451403
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116409043|gb|EG451635.1|EG451635
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGEST: gi|116408810|gb|EG451402.1|EG451402
genomic: ATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
EST: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAG AATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
genomic: TTCAAATGTATAGCCGTCTTCTAAACTTAGCTTCGGATTCTCTTGCAAAGgttagtgaaa ... gtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAG
atatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCAT
cattaat putative branch site (score: 3)
tcttcttctccatttg putative PPT
ttatttgtttgaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaaatgtaagaaattatatttgttatttgtttgaatcattaataatcttcttctccatttgtattacaagAATGAATTCAAACCCGATACACCAAACTTCCGGGAGGAAAGATCTTCAAAGTCATCACAGTGGAAGCCTTGTGCAGATAATAACAAAGCAGCTGTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG