1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttttttagttaaaatctaaataatccactgagattcgtgtttttcgtttttagaaaccctaatttttgagtgtgttttttttgtttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGATG
species | Arabidopsis thaliana |
transcript | AT1G28380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAG ATGTCGGAGAAGTTTAATCAAGATATGCGTCTCTCCGGGAAEST: gi|124912652|gb|EH986650.1|EH986650
genomic: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAA
EST: CTCCGATATACTCTCTTTTAATCAG ATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCAEST: gi|116397734|gb|EG440326.1|EG440326
genomic: CTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
EST: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAG ATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
genomic: ATAAAGGCGAACGTACTCGATTACGCTCCGATATACTCTCTTTTAATCAGgttttttagt ... ttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCA
tttttcgtttttagaaaccctaatttttgagtgtgttttttttgtttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGATG
ccctaat putative branch site (score: 3)
tgttttttttgttttt putative PPT
tgttttttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttagttaaaatctaaataatccactgagattcgtgtttttcgtttttagaaaccctaatttttgagtgtgttttttttgtttttgtgtagATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG