1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacatattttttcaccaaattctacaaaaactatcgttatatactgttctcttaagaattttcgttatacttattagtaatttctttgagttaatattggatgcagTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGAATTGGAAAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCATGAAC
species | Arabidopsis thaliana |
transcript | AT1G28130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAATCATCTGATATCGTCTCTGCTCAGCCCATCACAGAACTCCTCACTAG TTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGAEST: gi|116475481|gb|EG518073.1|EG518073
genomic: GAATCATCTGATATCGTCTCTGCTCAGCCCATCACAGAACTCCTCACTAGgtaaacatat ... ttggatgcagTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGA
EST: GAATCATCTGATATCGTCTCTGCTCAGCCCATCACAGAACTCCTCACTAG TTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGA
genomic: GAATCATCTGATATCGTCTCTGCTCAGCCCATCACAGAACTCCTCACTAGgtaaacatat ... ttggatgcagTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGA
ttaagaattttcgttatacttattagtaatttctttgagttaatattggatgcagTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGAATTGGAAAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCATGAAC
agttaat putative branch site (score: 4)
ttatacttattagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatattttttcaccaaattctacaaaaactatcgttatatactgttctcttaagaattttcgttatacttattagtaatttctttgagttaatattggatgcagTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCCTTCTACAGCTGAAGAATTGGAAAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA