1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttgataatagtttcattgattgaatgtgatgctgaagattctaaatgctttgatgtcaattttgggtctttgctgattggttaacatctctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAGTTTCCTCACCTGTGGCGTAGATTGCATCATCAATCCATGGACGTTGAA
species | Arabidopsis thaliana |
transcript | AT1G28100.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCCGGAGTGTTTCAACGAAGCTTGG GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAEST: gi|86043031|gb|DR338786.1|DR338786
genomic: CTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAEST: gi|86043027|gb|DR338782.1|DR338782
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAEST: gi|116475770|gb|EG518362.1|EG518362
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGG GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAEST: gi|125239221|gb|EL253306.1|EL253306
genomic: CGAAACCCATTTCAAGATTTCATCCTCCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
EST: CCGGAGTGTTTCAACGAAGCTTGG GTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
genomic: CCGGAGTGTTTCAACGAAGCTTGGgtattgtttc ... ctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAA
atgctttgatgtcaattttgggtctttgctgattggttaacatctctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAGTTTCCTCACCTGTGGCGTAGATTGCATCATCAATCCATGGACGTTGAA
ggttaac putative branch site (score: 3)
tctctgtc CT-rich tract
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgataatagtttcattgattgaatgtgatgctgaagattctaaatgctttgatgtcaattttgggtctttgctgattggttaacatctctgtcattagGTACATAAGTCTGATATGAGAGGTTTCGTCATAACTTGTCTTCTAAGGTAAGTTTCCTCACCTGTGGCGTAGATTGCATCATCAATCCATGGACGTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA