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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgcgttacactagactcgtcgttacaacgttttcacttctaacttatgctcctatacttatgttcttcgtcttcttattgtttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT

Basic information

species Arabidopsis thaliana
transcript AT1G27400.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164131144|gb|EL995927.1|EL995927
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATC
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATC
EST: gi|47827860|gb|CK117544.1|CK117544
EST:     TGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
genomic: TGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
EST: gi|125036072|gb|EL108341.1|EL108341
EST:     ATCCTCTCCGTCCTCTGTTCTCCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATCT
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAATCT
EST: gi|124843520|gb|EH927957.1|EH927957
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATAT
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATAT
EST: gi|164171465|gb|ES173629.1|ES173629
EST:     ATCCTCTCCGTCCTCTGTTCTTCTCATTAGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATC
genomic: ATCCTCTCCGTCCTCTGTTCTTCTCATT-GGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATC
EST: gi|116444090|gb|EG486682.1|EG486682
EST:     ACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATG                         GTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
genomic: ACTGAGATCTCTATCCTCTCCGTCCTCTGTTCTTCTCATTGGCCGCCATGgtaaatgcgt ... ttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaacttatgctcctatacttatgttcttcgtcttcttattgtttttcttcagGTGAAGTACTCTCAAGAGCCCGATAATATCACCAAAT
 ttctaac  putative branch site (score: 1)
                        tgttcttcgtcttctt  putative PPT
                                   ttcttattgttttt  TA-rich tract