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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctcgttcttctttcgggcacttttatagaatttcgttttcttatgatggataatggtggtgaagGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCA

Basic information

species Arabidopsis thaliana
transcript AT1G26230.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26230.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 1
------------------gttttctcgttcttctttcgggcacttttatagaatttcgttttcttatgatggataa---tggtgg-tgaagGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCA
                  |   |  |  |     | | |   ||| |  | |  ||| || ||| || |||| |     || ||| || ||||||| |  || ||||||||  ||||  | || ||||| ||||| ||||| ||| | || || ||||||||||||||||| |||||||| | |||||| |
gttgcatttctcaatagagcactgccactgccgctactgcttcttctgca-atcttcattgtctaataatggtttgctttgttggatgcagGCAGGGGTGGACATGGTGGCGGAACTGGTTGGTGTGACTTTAGGACCAAAAGGAAGGAATGTTGTGTTGCAGAACAAGTATGGGCCTCCCAAGATTGTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcgggcacttttatagaatttcgttttcttatgatggataatggtggtgaagGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAGGGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCA
         acttttatagaattt  TA-rich tract