1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtgttgaaccatatagactactaccgattccgaaatcaaaacaatggattgagttaacaacacttgagagtggctctcaatttttgaattggagatctgcatagttatattcattggtcaacattgtcaagtagtgaacttttccttcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATATGTACCGTATGGCTCTAATGGCACTTATAGCTGGTG
species | Arabidopsis thaliana |
transcript | AT1G26160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAEST: gi|124884116|gb|EH963018.1|EH963018
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: TTCCTAACGTTGTGTCATCGTCTCAAG ACAACAAAGAGAAAAGGGTGGATTAATCAGGGEST: gi|86043955|gb|DR339710.1|DR339710
genomic: TTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGG
EST: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAEST: gi|86043954|gb|DR339709.1|DR339709
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAEST: gi|86043958|gb|DR339713.1|DR339713
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
EST: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAG ACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
genomic: CTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGgtatgtgttg ... tcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCA
tagttatattcattggtcaacattgtcaagtagtgaacttttccttcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATATGTACCGTATGGCTCTAATGGCACTTATAGCTGGTG
cttttccttcttgtgt CT-rich tract
atattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttgaaccatatagactactaccgattccgaaatcaaaacaatggattgagttaacaacacttgagagtggctctcaatttttgaattggagatctgcatagttatattcattggtcaacattgtcaagtagtgaacttttccttcttgtgtagACAACAAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATATGTACCGTATGGCTCTAATGGCACTTATAGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT