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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatctatttcctccgttatctgttacatttgctgaatccgacgaaattggctcatcgatattcttaggcatatataaaaagatgatctttggtttgatcgatcactgatcaaaaactattattcagGGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG

Basic information

species Arabidopsis thaliana
transcript AT1G26120.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26120.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA16G18930.1 (Glycine max), 3'ss of exon 1
gtatctatctatttcctccgttatctgttacatttgctgaatccgacgaaattggctcatcgatattcttaggcatatataaaaagatgatctttggtttgatcgatcactgatcaaaaactattattcagGGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG
                                 ||     ||   |   ||     |  | | |  | |||     ||||      ||| |    | | ||   | |  ||||| |   | |  | ||||||||||| |||| |||||||||||  ||| | || ||||| ||||||||| | || ||  | ||||||||||||||||
------------------------------tggttttaagatgaaatttaacatcttgtttgtttgttttacatgaatatctttgcatg-taccagttatggatgctttctgataatttatttctgttcagGGTAGGCTATAAATGGATTACAAAGTTTCTTGCCCTTGGTTGTTATGCAGTACTCCTTTTCCCAGGCTTTATTCAAG

upper sequence: AT1G26120.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g02530.t01 (Vitis vinifera), 3'ss of exon 1
gtatctatctatttcctccgttatctgttacatttgctgaatccgacgaaattggctcatcgatattcttaggcatatataaaaagatgatctttggtttgatcgatcactgatcaaaaactattattcagGGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG
  |||||  ||||||       |    |   ||  | |||||          |    ||||   ||||| |      ||| | |||     ||||              ||||||    | | |||||||||||||| || |||||||||||||||||| | |||||||| |||||||| || ||||| |||||||| ||||||||||
agatctagttatttcactttccaatgttggtatgagatgaattt-------ctaatccatccg-attctcaac----tattagaag-----cttt--------------ctgatcgtttatttttattcagGGTAGGCTACAGATGGATTACAAGATTTCTTGCACTTGGTTGTTATGCCTTACTACTTATGCCAGGTTTTATTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atataaaaagatgatctttggtttgatcgatcactgatcaaaaactattattcagGGTAGGTTATAGATGGATTACAAGATTTATGGCACTTGGGTGTTATGCATTTCTACTAATGCCAGGCTTTATTCAAG
                               cactgat  putative branch site (score: 3)
                                    atcaaaaactattatt  TA-rich tract