Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttattacacatcctcttttgatatatatattcttcgttttcacgatcgcttccagtttcttaattgtttacatatcattcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAATGCGGCGGTGCCGT

Basic information

species Arabidopsis thaliana
transcript AT1G25550.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502815|gb|HO208355.1|HO208355
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
EST: gi|301501629|gb|HO207169.1|HO207169
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
EST: gi|116431435|gb|EG474027.1|EG474027
EST:     TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAG                         CTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG
genomic: TCAAGTCTTTCAACGTGAGCTCCCTTTATGTTTAGAACTTGTAACCCAAGgtaatgttat ... attcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcgttttcacgatcgcttccagtttcttaattgtttacatatcattcttgtagCTATCGAGTCATGTCGGAAGGAGTTATCGGAATCTTCAGAACATGTTGGCGGCCAGTCAGAATGTTCTGAGCGGACAACTAGTGAATGCGGCGGTGCCGT
                          tcttaat  putative branch site (score: 3)
                                           tcattctt  putative PPT
                            ttaattgtttacatat  TA-rich tract