Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86017093|gb|DR312839.1|DR312839EST: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCGTTTCCATG GTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
genomic: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCTTTTCCATGgtacgttatt ... tatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
EST:
gi|86084268|gb|DR380027.1|DR380027EST: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCGTTTCCATG GTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
genomic: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCTTTTCCATGgtacgttatt ... tatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
EST:
gi|125073329|gb|EL137702.1|EL137702EST: CGGTTGGCCAGCCTTTTCCATG GTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
genomic: CGGTTGGCCAGCCTTTTCCATGgtacgttatt ... tatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
EST:
gi|86076081|gb|DR371838.1|DR371838EST: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCGTTTCCATG GTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
genomic: AGCCACCGGAACGAGACATGGACATCAGCGGTTGGCCAGCCTTTTCCATGgtacgttatt ... tatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataaaagtgagtttactgttctcaaatttctaaaagttgaaataatatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGGTTTGGAGATGGAGGTAGAGAAGCTAGAGTTTCGA
ttctaaa putative branch site (score: 2)
aaatttctaaaagttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgttatttaaaatcctcattcttatagaattcaaataaaagtgagtttactgttctcaaatttctaaaagttgaaataatatgttttagGTGGAGAATGGAGGAGAAAGTACTCATCAGAAGCAATACGTTGGTGGATGTTTACCATCAAGTGGGTTTGGAGATGGAGGTAGAGAAGCTAGAGTTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC