1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taacttgttggagttagtaatgttttttcatagcttctatggttgaatcgattgatgaatggtttatctaagggttttgttttctgattttttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGTGAATGGAATTAGGGAGGCTGTTGAAAAATATTCCTCTGTCTATGTTTT
species | Arabidopsis thaliana |
transcript | AT1G25260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050071|gb|DR345826.1|DR345826
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050072|gb|DR345827.1|DR345827
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAG--ATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|124902471|gb|EH976551.1|EH976551
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: CTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|163981435|gb|ES117255.1|ES117255
genomic: CTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: GCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050070|gb|DR345825.1|DR345825
genomic: GCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050065|gb|DR345820.1|DR345820
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|116470214|gb|EG512806.1|EG512806
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|164124019|gb|EL984282.1|EL984282
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: GCTATGCCTAAATCAAAGCGAGATAGACCAG TEST: gi|164124019|gb|EL984282.1|EL984282
genomic: GCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcag-
EST: GCTATGCCTAAATCAAAGCGAGATAGACCAG TEST: gi|86050077|gb|DR345832.1|DR345832
genomic: GCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcag-
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050073|gb|DR345828.1|DR345828
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050069|gb|DR345824.1|DR345824
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTRKGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|164065646|gb|ES002686.1|ES002686
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: AGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|125284734|gb|EL298819.1|EL298819
genomic: AGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: ACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGEST: gi|86050075|gb|DR345830.1|DR345830
genomic: ACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050067|gb|DR345822.1|DR345822
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|152034840|gb|BP837977.2|BP837977
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: CAACATTTGAAACCTCAGCTATGCCCTAAACTCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGEST: gi|86050074|gb|DR345829.1|DR345829
genomic: CAACATTTGAAACCTCAGCTATG-CCTAAA-TCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
EST: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAG TGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
genomic: TACAACATTTGAAACCTCAGCTATGCCTAAATCAAAGCGAGATAGACCAGgttagaactc ... tttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTG
aatcgattgatgaatggtttatctaagggttttgttttctgattttttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGTGAATGGAATTAGGGAGGCTGTTGAAAAATATTCCTCTGTCTATGTTTT
ttctgat putative branch site (score: 3)
ttttctgatttttt CT-rich tract
ttttctgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttgttggagttagtaatgttttttcatagcttctatggttgaatcgattgatgaatggtttatctaagggttttgttttctgattttttgctgcagTGACTTTGTCTAAGACGAAGAAGAAAGGAAGAGAGCATAAGGAGTGTATTGTGAATGGAATTAGGGAGGCTGTTGAAAAATATTCCTCTGTCTATGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttat