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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttcttagagtcgaattagttttgatcttgattcgtttatccaaattctggttttctggttccaattgctgatgatgaattgttttcttccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTACGATACTCTGAATGAAAACGTCAAGAAGTGTCA

Basic information

species Arabidopsis thaliana
transcript AT1G23310.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074112|gb|DR369869.1|DR369869
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|152034049|gb|BP866344.2|BP866344
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAGGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074113|gb|DR369870.1|DR369870
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074142|gb|DR369899.1|DR369899
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074122|gb|DR369879.1|DR369879
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074111|gb|DR369868.1|DR369868
EST:     AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCT
genomic: AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAG-TTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCT
EST: gi|86074137|gb|DR369894.1|DR369894
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGNGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074131|gb|DR369888.1|DR369888
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAANAAGTGAGCTAGGGATTGGTACAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074128|gb|DR369885.1|DR369885
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074133|gb|DR369890.1|DR369890
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|116434550|gb|EG477142.1|EG477142
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074118|gb|DR369875.1|DR369875
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124776520|gb|EH866647.1|EH866647
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGA
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGA
EST: gi|164066536|gb|ES092617.1|ES092617
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATG
EST: gi|152035549|gb|BP857575.2|BP857575
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074145|gb|DR369902.1|DR369902
EST:     AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074138|gb|DR369895.1|DR369895
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124860743|gb|EH945180.1|EH945180
EST:     CAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTT
genomic: CAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTT
EST: gi|125102132|gb|EL157008.1|EL157008
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAA
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAA
EST: gi|86074148|gb|DR369905.1|DR369905
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124749832|gb|EH839962.1|EH839962
EST:     GTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074116|gb|DR369873.1|DR369873
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125302771|gb|EL316856.1|EL316856
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTG
EST: gi|86074119|gb|DR369876.1|DR369876
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074121|gb|DR369878.1|DR369878
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074120|gb|DR369877.1|DR369877
EST:     GMACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124929810|gb|EL007323.1|EL007323
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAA
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAA
EST: gi|125320887|gb|EL334972.1|EL334972
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTG
EST: gi|124818695|gb|EH903561.1|EH903561
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTT
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTT
EST: gi|86074139|gb|DR369896.1|DR369896
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125076059|gb|EL139353.1|EL139353
EST:     GTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGG
genomic: GTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGG
EST: gi|86074115|gb|DR369872.1|DR369872
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074146|gb|DR369903.1|DR369903
EST:     AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|116400460|gb|EG443052.1|EG443052
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125101067|gb|EL156299.1|EL156299
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGT
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGT
EST: gi|86074107|gb|DR369864.1|DR369864
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074110|gb|DR369867.1|DR369867
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124978011|gb|EL051268.1|EL051268
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAANAAGTG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTG
EST: gi|125035245|gb|EL107514.1|EL107514
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAA
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAA
EST: gi|86074127|gb|DR369884.1|DR369884
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074144|gb|DR369901.1|DR369901
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125147881|gb|EL181870.1|EL181870
EST:     AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTTGAGTTTGAAG                         AGGAGGGAAGAAGTG
genomic: AACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATT-GAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTG
EST: gi|125312824|gb|EL326909.1|EL326909
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTG
EST: gi|86074123|gb|DR369880.1|DR369880
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074125|gb|DR369882.1|DR369882
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|124753909|gb|EH844039.1|EH844039
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAG
EST: gi|124882832|gb|EH961734.1|EH961734
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGG
EST: gi|86074132|gb|DR369889.1|DR369889
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074106|gb|DR369863.1|DR369863
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125221458|gb|EL235543.1|EL235543
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGG
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGG
EST: gi|86074109|gb|DR369866.1|DR369866
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|125170437|gb|EL193913.1|EL193913
EST:     CGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTACAGAGTGAACATAAATGGCT
genomic: CGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTT-CAGAGTGAACATAAATGGCT
EST: gi|86074129|gb|DR369886.1|DR369886
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074143|gb|DR369900.1|DR369900
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|152038525|gb|AV826916.2|AV826916
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC
EST: gi|86074136|gb|DR369893.1|DR369893
EST:     GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAG                         AGGAGGGAAGAAGTGAGCTAGGGATTGGTTCANAGTGAACATAAATGGNTC
genomic: GAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGgtttgtgatt ... ccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctggttttctggttccaattgctgatgatgaattgttttcttccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTACGATACTCTGAATGAAAACGTCAAGAAGTGTCA
                      tgctgat  putative branch site (score: 3)
                                   ttgttttcttcc  putative PPT
                                 aattgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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tgttcttagagtcgaattagttttgatcttgattcgtttatccaaattctggttttctggttccaattgctgatgatgaattgttttcttccaattgtagAGGAGGGAAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTACGATACTCTGAATGAAAACGTCAAGAAGTGTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT