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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattttttatcctcacttgttagctttcaattttcatttgtagctcaatttgttgatgggtttgttttgttctcttttgcttttctagAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAATCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGT

Basic information

species Arabidopsis thaliana
transcript AT1G23280.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164055460|gb|ES182207.1|ES182207
EST:     GCACTGTAGTTACATGGCCAA                         AATCGAAACTGGAATCTTTTGCAGAAACCAATATAATTGTAACAGGAATCT
genomic: GCACTGTAGTTACATGGCCAAgtatgtattt ... gcttttctagAATCGAAACTGGAATCTTTTGCAGAAACCAATATAAT-GTAACAGGAATCT
EST: gi|116428711|gb|EG471303.1|EG471303
EST:     GAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAA                         AATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTG
genomic: GAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAAgtatgtattt ... gcttttctagAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTG
EST: gi|116428738|gb|EG471330.1|EG471330
EST:     GAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAA                         AATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTG
genomic: GAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAAgtatgtattt ... gcttttctagAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttgtagctcaatttgttgatgggtttgttttgttctcttttgcttttctagAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAATCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGT
                 tgttgat  putative branch site (score: 4)
                           tttgttttgttctctt  putative PPT
             aatttgtt  TA-rich tract