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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactgttaaaaccattttcaagactaccttttctctatttcagacaaaccaaagtaaaacaatgaaaaatctctctggtctttcatagGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G22690.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124930701|gb|EL008126.1|EL008126
EST:     TGTGGTGGCTTTTGTTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAG                         GTACTTGCAGAGTTGTCATCATCCAG
genomic: TGTGGTGGCTTTTG-TTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAGgtaaactgtt ... tctttcatagGTACTTGCAGAGTTGTCATCATCCAG
EST: gi|125317052|gb|EL331137.1|EL331137
EST:     TGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAAG                         GTACTTGCAGAGTTGTCATCATCC
genomic: TGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCA-Ggtaaactgtt ... tctttcatagGTACTTGCAGAGTTGTCATCATCC
EST: gi|116456239|gb|EG498831.1|EG498831
EST:     ATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAG                         GTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT
genomic: ATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAGgtaaactgtt ... tctttcatagGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT
EST: gi|152034082|gb|BP866993.2|BP866993
EST:     ATGTGGTGGC-TTGGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAG                         GTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT
genomic: ATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAGgtaaactgtt ... tctttcatagGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT
EST: gi|19878826|gb|AU239657.1|AU239657
EST:     ATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAG                         GTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT
genomic: ATGTGGTGGCTTTTGTTACGCTGATCATCTCTTTTCTTCTGCTTTCTCAGgtaaactgtt ... tctttcatagGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatttcagacaaaccaaagtaaaacaatgaaaaatctctctggtctttcatagGTACTTGCAGAGTTGTCATCATCCAGCAACAATGAAACTTCCTCTGTTTCTCAG
                                    tctctctggtctttc  CT-rich tract
                     taaaacaatgaaaaat  TA-rich tract