1 5' 3' | 2 5' 3' | 3 5' 3' |
...gctttatatttgcagatttggtttggatgttcttaaagctaatcattgtcataagatttttgtatggtgtcttgaattttctgtgatttggtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAGTTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTT
species | Arabidopsis thaliana |
transcript | AT1G21900.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAG GTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATEST: gi|116421116|gb|EG463708.1|EG463708
genomic: GCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAGgtaaggttcc ... gtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACAT
EST: ATGTCGTCGATGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAG GTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATEST: gi|164119118|gb|ES166492.1|ES166492
genomic: ATGTCGTCGATGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAGgtaaggttcc ... gtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACAT
EST: TGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAG GTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACAT
genomic: TGAGCATAATCCTGAAAATACACCTGCTGTTTCTTCTAAGgtaaggttcc ... gtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACAT
ttgtcataagatttttgtatggtgtcttgaattttctgtgatttggtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAGTTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTT
ataagatttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttatatttgcagatttggtttggatgttcttaaagctaatcattgtcataagatttttgtatggtgtcttgaattttctgtgatttggtttggatagGTAACATCTCCGTATGGGAACAATCTTCATCACCAAGAAAATGTAACACATGGTCAGTTTGCATTCACAACTCAAGAAGCTGGGAACTACTTGGCTTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - -aagctaa