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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcaactcatttcctcaacctctctctctgtctttctatcttcttcgtctttcttccatgagaaatcactgagagtactactaatccgtttttgtcgtttttctactttttacagGAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTC

Basic information

species Arabidopsis thaliana
transcript AT1G21460.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876186|gb|AU237017.1|AU237017
EST:     CCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCG                         GAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTC
genomic: CCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCGgtagcaactc ... ctttttacagGAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTC
EST: gi|125270674|gb|EL284759.1|EL284759
EST:     CCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCG                         GAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTC
genomic: CCTTTGAGATCAAAAGATGAACATCGCTCACACTATCTTCGGCGTTTTCGgtagcaactc ... ctttttacagGAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTCGATAACATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaatcactgagagtactactaatccgtttttgtcgtttttctactttttacagGAAATGCAACTGCTCTGTTTCTTTTCTTGGCTCCTTC
                  tactaat  putative branch site (score: 1)
                        tccgtttttgtcgttt  CT-rich tract
                                     tttttctacttttta  TA-rich tract